1. Patrick R. Amestoy, Alfredo Buttari, Iain S. Duff, Abdou Guermouche, Jean-Yves L'Excellent, and Bora Uçar. The Multifrontal Method. In David Padua, editor,Encyclopedia of Parallel Computing. Springer, 2011. [bibtex-entry]



2. Patrick R. Amestoy, Alfredo Buttari, Iain S. Duff, Abdou Guermouche, Jean-Yves L'Excellent, and Bora Uçar. MUMPS. In David Padua, editor,Encyclopedia of Parallel Computing. Springer, 2011. [bibtex-entry]



3. Ümit V. \cCatalyürek, Bora Uçar, and Cevdet Aykanat. Hypergraph Partitioning. In David Padua, editor,Encyclopedia of Parallel Computing. Springer, 2011. [bibtex-entry]



4. Iain S. Duff, Kamer Kaya, and Bora Uçar. Design, Implementation, and Analysis of Maximum Transversal Algorithms. ACM Transactions on Mathematical Software, 38(2), 2011. [bibtex-entry]



5. Thomas Ropars, Amina Guermouche, Bora Uçar, Esteban Meneses, Laxmikant Kalé, and Franck Cappello. On the Use of Cluster-Based Partial Message Logging to Improve Fault Tolerance for MPI HPC Applications. In Emmanuel Jeannot, Raymond Namyst, and Jean Roman, editors,Euro-Par 2011 Parallel Processing, volume 6852 of Lecture Notes in Computer Science, pages 567-578. Springer Berlin / Heidelberg, 2011. [bibtex-entry]



6. Eray Özkural, Bora Uçar, and Cevdet Aykanat. Parallel Frequent Item Set Mining with Selective Item Replication. IEEE Transactions on Parallel and Distributed Systems, 22:1632--1640, 2011. [bibtex-entry]



7. Ümit V. \cCatalyürek, Cevdet Aykanat, and Bora Uçar. On two-dimensional sparse matrix partitioning: Models, methods, and a recipe. SIAM Journal on Scientific Computing, 32(2):656--683, 2010. [bibtex-entry]



8. Iain S. Duff and Bora Uçar. On the block triangular form of symmetric matrices. SIAM Review, 52(3):455--470, 2010. [bibtex-entry]



9. Bora Uçar, Ümit V. \cCatalyürek, and Cevdet Aykanat. A Matrix Partitioning Interface to PaToH in MATLAB. Parallel Computing, 36(5--6):254--272, June 2010. [bibtex-entry]



10. Kamer Kaya and Bora Uçar. Exact algorithms for a task assignment problem. Parallel Processing Letters, 19(3):451-465, 2009. [bibtex-entry]



11. Cevdet Aykanat, Berkant B. Cambazoglu, and Bora Uçar. Multi-level direct K-way hypergraph partitioning with multiple constraints and fixed vertices. Journal of Parallel and Distributed Computing, 68:609--625, 2008. [bibtex-entry]



12. Kamer Kaya, Bora Uçar, and Cevdet Aykanat. Adapting iterative-improvement heuristics for scheduling file-sharing tasks on heterogeneous platforms. In F. Xhafa and A. Abraham, editors,Metaheuristics for Scheduling in Distributed Computing Environments, number 146 of Studies in Computational Intelligence, chapter 5, pages 121--151. Springer-Verlag Berlin Heidelberg, 2008. [bibtex-entry]



13. Michele Benzi and Bora Uçar. Block triangular preconditioners for M-matrices and Markov chains. Electronic Transactions on Numerical Analysis, 26:209--227, 2007. [bibtex-entry]



14. Kamer Kaya, Bora Uçar, and Cevdet Aykanat. Heuristics for scheduling file-sharing tasks on heterogeneous systems with distributed repositories. Journal of Parallel and Distributed Computing, 67:271--285, 2007. [bibtex-entry]



15. Bora Uçar and Cevdet Aykanat. Partitioning Sparse Matrices for Parallel Preconditioned Iterative Methods. SIAM Journal on Scientific Computing, 29(4):1683--1709, 2007. [bibtex-entry]



16. Bora Uçar and Cevdet Aykanat. Revisiting Hypergraph Models for Sparse Matrix Partitioning. SIAM Review, 49(4):595--603, 2007. [bibtex-entry]



17. Bora Uçar, Cevdet Aykanat, Mustafa \cCelebi Pinar, and Tahir Malas. Parallel image restoration using surrogate constraint methods. Journal of Parallel and Distributed Computing, 67:186--204, 2007. [bibtex-entry]



18. Bora Uçar, Cevdet Aykanat, Kamer Kaya, and Murat Ikinci. Task assignment in heterogeneous computing systems. Journal of Parallel and Distributed Computing, 66:32--46, 2006. [bibtex-entry]



19. Bora Uçar and Cevdet Aykanat. Encapsulating Multiple Communication-Cost Metrics in Partitioning Sparse Rectangular Matrices for Parallel Matrix-Vector Multiplies. SIAM Journal on Scientific Computing, 25(6):1837--1859, 2004. [bibtex-entry]

1. Ümit V. \cCatalyürek, Kamer Kaya, and Bora Uçar. Integrated data placement and task assignment for scientific workflows in clouds. In Proceedings of the fourth international workshop on Data-intensive distributed computing, DIDC '11, New York, NY, USA, pages 45--54, 2011. ACM. [bibtex-entry]



2. Mathias Jacquelin, Loris Marchal, Yves Robert, and Bora Uçar. On optimal tree traversals for sparse matrix factorization. In IPDPS'2011, the 25th IEEE International Parallel and Distributed Processing Symposium, 2011. IEEE Computer Society Press. [bibtex-entry]



3. Kamer Kaya, François-Henry Rouet, and Bora Uçar. On partitioning problems with complex objectives. In HPSS, Workshops of Europar 2011, 2011.
   Note: To appear. [bibtex-entry]



4. Bora Uçar and Ümit V. \cCatalyürek. On scalability of hypergraph models for sparse matrix partitioning. In M. Danelutto, J. Bourgeois, and T. Gross, editors, Proceedings of PDP 2010: 18th Euromicro International Conference on Parallel, Distributed and Network-Based Computing, pages 593--600, 2010. IEEE Computer Society, Conference Publishing Services. [bibtex-entry]



5. Patrick R. Amestoy, Iain S. Duff, Daniel Ruiz, and Bora Uçar. A parallel matrix scaling algorithm. In J. M. Palma, P. R. Amestoy, M. Daydé, M. Mattoso, and J. C. Lopes, editors, High Performance Computing for Computational Science - VECPAR 2008: 8th International Conference, volume 5336 of Lecture Notes in Computer Science, pages 301--313, 2008. Springer Berlin / Heidelberg. [bibtex-entry]



6. Bora Uçar. Heuristics for a matrix symmetrization problem. In R. Wyrzykowski, J. Dongarra, K. Karczewski, and J. Wasniewski, editors, Proceedings of Parallel Processing and Applied Mathematics (PPAM'07), volume 4967 of Lecture Notes in Computer Science, pages 718--727, 2008. [bibtex-entry]



7. Michele Benzi and Bora Uçar. Product preconditioning for Markov chain problems. In A. N. Langville and W. J. Stewart, editors, Proceedings of the 2006 Markov Anniversary Meeting, Charleston, SC, pages 239--256, 2006. Boson Books, Raleigh, NC.
   Note: Best paper award. [bibtex-entry]



8. Bora Uçar and Cevdet Aykanat. A Message Ordering Problem in Parallel Programs. In D. Kranzlm\:uller, P. Kacsuk, and J. J. Dongarra, editors, Recent Advances in Parallel Virtual Machine and Message Passing Interface, volume 3241 of Lecture Notes in Computer Science, pages 232--256, 2004. Springer Berlin / Heidelberg. [bibtex-entry]



9. Bora Uçar and Cevdet Aykanat. Minimizing Communication Cost in Fine-Grain Partitioning of Sparse Matrices. In Computer and Information Sciences - ISCIS 2003, volume 2869 of Lecture Notes in Computer Science, pages 926--933, 2003. Springer Berlin / Heidelberg. [bibtex-entry]

1. Bora Uçar and Ümit V. \cCatalyürek. Partitioning regular meshes for minimizing the total communication volume. Presentation at SIAM Conference on Parallel Processing for Scientific Computing (PP10), Seattle, Washington, USA, February 2010. [bibtex-entry]



2. Patrick R. Amestoy, Iain S. Duff, Daniel Ruiz, and Bora Uçar. Towards parallel bipartite matching algorithms. Presentation at Scheduling for large-scale systems, Knoxville, Tennessee, USA, May 2009. [bibtex-entry]



3. Patrick R. Amestoy, Iain S. Duff, \relax Tzvetomila Slavova, and Bora Uçar. Out-of-core solution for singleton rhs vectors. Presentation at SIAM Conference on Computational Science and Engineering (CSE09), Miami, Florida, USA, March 2009. [bibtex-entry]



4. Patrick R. Amestoy, Iain S. Duff, \relax Tzvetomila Slavova, and Bora Uçar. Out-of-core solution for singleton right hand-side vectors. Poster at Dagstuhl Seminar on Combinatorial Scientific Computing, February 2009. [bibtex-entry]



5. Ümit V. \cCatalyürek and Bora Uçar. Partitioning sparse matrices. Presentation at SIAM Conference on Computational Science and Engineering (CSE09), Miami, Florida, USA delivered by Ümit V. \cCatalyürek, March 2009. [bibtex-entry]



6. Iain S. Duff and Bora Uçar. Combinatorial problems in solving linear systems. Invited presentation at Dagstuhl Seminar on Combinatorial Scientific Computing delivered by Iain S. Duff, February 2009. [bibtex-entry]



7. Patrick R. Amestoy, Alfredo Buttari, \relax Philippe Combes, Abdou Guermouche, Jean-Yves L'Excellent, \relax Tzvetomila Slavova, and Bora Uçar. Overview of MUMPS (A multifrontal Massively Parallel Solver), June 2008.
   Note: Presentation at the 2nd French-Japanese workshop on Petascale Applications, Algorithms and Programming (PAAP'08). [bibtex-entry]

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